BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB012C12SP1|AL426347
(818 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig835 1287 0.0
3x_Contig960 235 9e-62
>3x_Contig835
Length = 2829
Score = 1287 bits (640), Expect = 0.0
Identities = 675/697 (96%), Gaps = 1/697 (0%)
Strand = Plus / Plus
Query: 1 gatcaaagaacccaataatgaaccacctgccatagaagcagtnataccaccgtaagtyaa 60
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||
Sbjct: 2134 gatcaaagaacccaagaatgaaccacctgccatagaagcagtaataccaccgtaagtcaa 2193
Query: 61 agagtcaggattactgawatagtccttgtaaacatcggtaccaatcatagaagacatcga 120
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2194 agagtcaggattactgaaatagtccttgtaaacatcggtaccaatcatagaagacatcga 2253
Query: 121 tgcgatatcaaaaccgaacataagaccggagatacatgctatgaaaccgatgacgtaaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2254 tgcgatatcaaaaccgaacataagaccggagatacatgctatgaaaccgatgacgtaaat 2313
Query: 181 kttgtagacatgggggaactttttataaaacgttccctcgtattggatatcacgtagcaa 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2314 gttgtagacatgggggaactttttataaaacgttccctcgtattggatatcacgtagcaa 2373
Query: 241 aagccaatttttcaatgacattttgttgttattagctaaagttgatgtttgttatagttt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2374 aagccaatttttcaatgacattttgttgttattagctaaagttgatgtttgttatagttt 2433
Query: 301 gttatmatacgttttttmattgggttattgaatcgaaagggaaaahhacagaaacaaaca 360
||||| ||||||||||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct: 2434 gttataatacgttttttaattgggttattgaatcgaaagggaaaaaaacagaaacaaaca 2493
Query: 361 accgaaaagtgttttcgaatcgacaccaagaagaggcaagttagaaggtttattacctgg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2494 accgaaaagtgttttcgaatcgacaccaagaagaggcaagttagaaggtttattacctgg 2553
Query: 421 cttttatatcagahacaacggattaamtcttaaaccattcaagctggaaaatmgtgtaaa 480
||||||||||||| |||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct: 2554 cttttatatcagaaacaacggattaaatcttaaaccattcaagctggaaaatagtgtaaa 2613
Query: 481 thgaactaagamagacaaahmmaccctctgatcattctacatcagttacgctaatttctt 540
| ||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 2614 tagaactaagaaagaaaaaaaaaccctctgatcattctacatcagttacgctaatttctt 2673
Query: 541 agcccgttgattaattagtctggggcaacatcgtcgatggaataacgamacattgtccca 600
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 2674 agcccgttgattaattagtctggggcaacatcgtcgatggaataacgaaacattgtccca 2733
Query: 601 aagcgtcattgtgtaaggvgctaaagacaatccggcaccaaggaagagcggggaggatac 660
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct: 2734 aagcgtcattgtgtaaggagctaaagaaaatccggcaccaaggaagagcggggaggatac 2793
Query: 661 agcctgccaactggcaacggtggactttctaacatgg 697
||||||||||||||||||||||||| |||||||||||
Sbjct: 2794 agcctgccaactggcaacggtggac-ttctaacatgg 2829
>3x_Contig960
Length = 2402
Score = 235 bits (117), Expect = 9e-62
Identities = 120/122 (98%)
Strand = Plus / Minus
Query: 697 gagagctttcacggaacacgacgatgcgatgagcatcttctatcaataaaaganaaacac 756
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 2402 gagagctttcacggaacacgacgatgcgatgagcatcttctatcaataaaagaaaaacac 2343
Query: 757 tacaatcctcaacattaccgttctcactcactgctcggaattctgggtyctgtcactttt 816
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 2342 tacaatcctcaacattaccgttctcactcactgctcggaattctgggtcctgtcactttt 2283
Query: 817 ct 818
||
Sbjct: 2282 ct 2281
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.39 0.713 1.32
Gapped
Lambda K H
1.39 0.713 1.32
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4277
Number of Sequences: 1807
Number of extensions: 4277
Number of successful extensions: 65
Number of sequences better than 1.0e-20: 2
length of query: 818
length of database: 10,358,551
effective HSP length: 16
effective length of query: 802
effective length of database: 10,329,639
effective search space: 8284370478
effective search space used: 8284370478
T: 0
A: 40
X1: 5 (10.1 bits)
X2: 14 (28.2 bits)
S1: 12 (24.6 bits)
S2: 50 (101.0 bits)